YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05186
Organism:	Caenorhabditis elegans
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05186.

Description	E-value	Query Range	Subject Range
gi\|39582784, gi\|... - gi\|39582784\|emb\|CAE74247.1\| Hypothetical protein CBG21933 [Caenorhabditis briggsae], gi\|187022216\|em... gi\|157749265 - gi\|157749265\|ref\|XP_001678346.1\| Hypothetical protein CBG21933 [Caenorhabditis briggsae AF16]	329.0	[0..1]	[187..1]
gi\|91087373 - gi\|91087373\|ref\|XP_975639.1\| PREDICTED: similar to adenylate cyclase [Tribolium castaneum]	56.0	[0..2]	[175..491]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTFLECPHC QRLYSKHSLL IHEKNCIESM HKILEQEKLK MQNNQKRGRS KSGRRKKIRP  60
   61 AEMTTTERPR TRSLSRYNHE NNGLRICFVC GEQYDDQVIE EHKEKCYGDW SILSKSLSVR 120
  121 FHIHQPKTLN TPSIDGTIDV ARENMRAVQS SHNCQIVRCR FCNARISLQH AQSHQCVRFE 180
  181 PTIEFYC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.03
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits