YRC Public Data Repository - Protein Structure Prediction

Protein:	pfd-4
Organism:	Caenorhabditis elegans
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pfd-4.

Description	E-value	Query Range	Subject Range
gi\|94420296 - gi\|94420296\|ref\|XP_001005759.1\| PREDICTED: similar to prefoldin subunit 4 [Mus musculus]	152.0	[0..2]	[126..46]
gi\|157755875 - gi\|157755875\|ref\|XP_001670281.1\| Hypothetical protein CBG06071 [Caenorhabditis briggsae AF16] PFD4_CAEBR - Probable prefoldin subunit 4 OS=Caenorhabditis briggsae GN=pfd-4 PE=3 SV=1	142.0	[0..1]	[126..1]
gi\|73992603 - gi\|73992603\|ref\|XP_534459.2\| PREDICTED: similar to prefoldin 4 [Canis familiaris]	133.0	[0..2]	[126..9]
gi\|13160148, gi\|... - gi\|1620561\|gb\|AAB17063.1\| C-1, emb\|CAB98782.2\| dJ1162C3.1 (Prefoldin 4 (C-1)) [Homo sapiens]	133.0	[0..2]	[126..6]
gi\|145013752, gi... - gi\|39977691\|ref\|XP_370233.1\| hypothetical protein MGG_06730 [Magnaporthe grisea 70-15], gb\|EAA55073....	132.0	[0..3]	[123..16]
gi\|23482753 - gi\|23482753\|gb\|EAA18641.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|82705700 - gi\|82705700\|ref\|XP_727076.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	131.0	[0..7]	[123..59]
gi\|60654257 - gi\|60654257\|gb\|AAX29821.1\| prefoldin 4 [synthetic construct]	131.0	[0..3]	[126..11]
PFD4_BOVIN - Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1	129.0	[0..3]	[126..11]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEHTKVSAE DQALLNKFAR SYQTQTQLKA DVKEAKTLID NINEASDEIL LLDDEDSASI  60
   61 PCRIGSCFVH FNGDSLNEHL EGKKTTAEKV LSEKTSELDA ISADMEQIKK VLYAKFGDQI 120
  121 NLDAEE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.25
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits