YRC Public Data Repository - Protein Structure Prediction

Protein:	col-150
Organism:	Caenorhabditis elegans
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-150.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	225.0	[0..25]	[295..1497]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	190.0	[0..50]	[296..355]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	177.0	[0..31]	[283..1912]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	162.0	[0..6]	[288..772]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	152.0	[0..33]	[297..230]
gi\|157763364 - gi\|157763364\|ref\|XP_001674024.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae AF16] gi\|39593313, gi\|... - gi\|39593313\|emb\|CAE64783.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae], gi\|187031733\|em...	149.0	[0..1]	[289..1]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	147.0	[0..33]	[292..246]
gi\|47215142 - gi\|47215142\|emb\|CAG12433.1\| unnamed protein product [Tetraodon nigroviridis]	139.0	[0..30]	[294..201]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLLVGI ASLASTVAVI VCLVVIPSLY STINEVHEEV LDGVKIFRAE TDAAWVEMLD  60
   61 VQVMVSPPSK PKENPFNSVF RQKRQTFSGL PSWCQCEPAK PRCPRGPPGP PGRPGQRGTS 120
  121 GSPGPRGQDN HQVHAPIQCP RQQPGCVKCP RGPAGPTGSI GQAGRPGPDG RPGQPGRKGN 180
  181 NGRPGQPAPQ GNAGHPGRDG EPGQPGNPGK DGRKGRGHPG TAGRPGQPGK QGSAGNPGRK 240
  241 GERGQDGQPG PGGRPGQPGN RGSDGHPGTP GGRGLPGPDA AYCACPPRSS VFVKARH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits