YRC Public Data Repository - Protein Structure Prediction

Protein:	col-149
Organism:	Caenorhabditis elegans
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-149.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	230.0	[0..37]	[296..1513]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	189.0	[0..42]	[296..345]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	179.0	[0..32]	[287..1878]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	167.0	[0..53]	[289..869]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	163.0	[0..53]	[297..266]
gi\|157763364 - gi\|157763364\|ref\|XP_001674024.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae AF16] gi\|39593313, gi\|... - gi\|39593313\|emb\|CAE64783.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae], gi\|187031733\|em...	158.0	[0..1]	[297..1]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	154.0	[0..30]	[296..243]
gi\|47215142 - gi\|47215142\|emb\|CAG12433.1\| unnamed protein product [Tetraodon nigroviridis]	143.0	[0..40]	[296..133]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLLVGI ASLASTIAIL TCVVVIPGLY STINEMHDEV LDGVKMFRAD TDAAWVEMLD  60
   61 VQVMVSPPSQ PKENPFNSV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.552842
Match:	PF01484.8
Description:	No description for PF01484.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRQKRRSTFS GLPAWCQCEP TKPKCPRGPP GPPGHPGQRG IPGIPGRNGQ DNYNTIRAPA  60
   61 CPPRNQDCIK CPAGPPGPSG TCGQVGRPGP DGRPGQPGRR GNDGRPGQPG PQGNAGQPGR 120
  121 DGNPGQPGHP GKDGRRGHGS PGAPGRAGQP GRQGAPGNPG RPGERGPSGP CGPAGRSGQP 180
  181 GNRGSDGHPG APGNPGLQGS DAAYCACPTR SVMFLKRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits