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View Structure Prediction Details

Protein: col-151
Organism: Caenorhabditis elegans
Length: 325 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-151.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
309.0 [0..38] [324..1431]

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Predicted Domain #1
Region A:
Residues: [1-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHTNFLFAT ILLIVFAVLT ILASIFSVFN EIENFEITSL EDLKTFEKYS DDAWNLITES  60
   61 IREKRAVYRI KLPPRHGYGQ PRYVTIPPTN SYAVPEVGGS MPLICPEGPP GRPGHPGHPG 120
  121 EDGSAGQPGS PGGVGVLLSM KLPYNGCIQC PMGPQGQPGR PGLMGHPGDV GVTGMDGIPG 180
  181 GRGLPGYPGM PGDNGSGGAN GHDGATGQPG RSGTRSYGSP GPAGSPGRVG RGGPPGPDGG 240
  241 YPMSGEPGSS GPQGKAGQPG GPGVDGHPGR PGGSGRPGPD SGYCKCPQRG KTDEFSNYNT 300
  301 KASTPTEKPE ASSDWRRVRK VKVSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.09691
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle