YRC Public Data Repository - Protein Structure Prediction

Protein:	msh-4
Organism:	Caenorhabditis elegans
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for msh-4.

Description	E-value	Query Range	Subject Range
MUTS_RHOBA - DNA mismatch repair protein mutS OS=Rhodopirellula baltica GN=mutS PE=3 SV=1 MUTS_RHOBA - DNA mismatch repair protein MutS OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) GN... MUTS_RHOBA - DNA mismatch repair protein mutS OS=Rhodopirellula baltica GN=mutS PE=3 SV=1	155.0	[0..1]	[107..675]
gi\|87286833, gi\|... - gi\|87310334\|ref\|ZP_01092464.1\| DNA mismatch repair protein [Blastopirellula marina DSM 3645], gi\|872...	154.0	[0..1]	[107..661]
MUTS_CHLAA - DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)... MUTS_CHLSY - DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl...	154.0	[0..1]	[107..752]
MUTS_MYXXD - DNA mismatch repair protein MutS OS=Myxococcus xanthus (strain DK 1622) GN=mutS PE=3 SV=1	152.0	[0..1]	[107..674]
MUTS_ROSS1 - DNA mismatch repair protein MutS OS=Roseiflexus sp. (strain RS-1) GN=mutS PE=3 SV=1	152.0	[0..1]	[107..855]
MUTS_BACHD - DNA mismatch repair protein mutS OS=Bacillus halodurans GN=mutS PE=3 SV=1 MUTS_BACHD - DNA mismatch repair protein MutS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344...	152.0	[0..1]	[107..648]
MUTS_GLOVI - DNA mismatch repair protein MutS OS=Gloeobacter violaceus (strain PCC 7421) GN=mutS PE=3 SV=1 MUTS_GLOVI - DNA mismatch repair protein mutS OS=Gloeobacter violaceus GN=mutS PE=3 SV=1	152.0	[0..1]	[107..728]
MUTS_SYNJB - DNA mismatch repair protein MutS OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=mutS PE=3 SV=1 gi\|86558699, gi\|... - gi\|86610157\|ref\|YP_478919.1\| DNA mismatch repair protein MutS [Cyanobacteria bacterium Yellowstone B...	152.0	[0..1]	[107..694]
gi\|115377553, gi... - gi\|115377553\|ref\|ZP_01464752.1\| DNA mismatch repair protein MutS [Stigmatella aurantiaca DW4/3-1], g...	151.0	[0..1]	[107..700]
MUTS_SACD2 - DNA mismatch repair protein MutS OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) ...	151.0	[0..1]	[107..664]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHNDELIRN KSAFASEMSD AAAIVQYADK NSLVVLDELA RSTSTEEGIA ITYAICEKVL  60
   61 KLHSYTFLAT HFLDIAALAN YSNAIDNYHF LPQIDDNSTK KHKLLRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1wbdA
Description:	Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatch
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits