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View Structure Prediction Details

Protein: glb-23
Organism: Caenorhabditis elegans
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-23.

Description E-value Query
Range
Subject
Range
gi|39593545, gi|... - gi|39593545|emb|CAE61837.1| Hypothetical protein CBG05809 [Caenorhabditis briggsae], gi|187034700|em...
gi|157756305 - gi|157756305|ref|XP_001670496.1| Hypothetical protein CBG05809 [Caenorhabditis briggsae AF16]
330.0 [0..1] [342..1]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSHPGVTS TSSKSTKGKL GRQRRLSDPS QNQNVKNCHM PTGSSSNNTS STTPPTIQIN  60
   61 GKESFDEFEH GQLRAKSAST DFSSLRSTSS TSSYQKPQKN SASERRKIFL SSSTNQDFMA 120
  121 RSLDDSMTAK MSCMIRTKSH SPLKQMRTYS FRSIPSEEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIDKESCEVV ADSWRLVESR SSAAETSACF GLFVFQRVFS KIPMLRPLFG LSESDDVFDL  60
   61 PDNHPVRRHA RLFTSILHIS VKNVDELEAQ VAPTVFKYGE RHYRPDITPH MTEENVRVFC 120
  121 AQIVCTVFDF LRDTEATPKC AESWIELMRY LGQKLLDGFD FAKLTAERKI SINRNDHHLF 180
  181 LML

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 1dxtB
Description: Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle