YRC Public Data Repository - Protein Structure Prediction

Protein:	cah-3
Organism:	Caenorhabditis elegans
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cah-3.

Description	E-value	Query Range	Subject Range
CAH2_TRIHK - Carbonic anhydrase 2 OS=Tribolodon hakonensis GN=ca2 PE=2 SV=3	321.0	[0..1]	[240..1]
gi\|35505160, gi\|... - gi\|40363537\|ref\|NP_954685.1\| carbonic anhydrase II [Danio rerio], gi\|35505160\|gb\|AAH57412.1\| Carboni...	318.0	[0..1]	[240..1]
gi\|56554783 - gi\|56554783\|gb\|AAV97962.1\| carbonic anhydrase [Pseudopleuronectes americanus]	314.0	[0..1]	[240..1]
gi\|22252956 - gi\|22252956\|gb\|AAM94169.1\| erythrocyte carbonic anhydrase [Lepisosteus osseus]	314.0	[0..1]	[240..1]
gi\|32187014, gi\|... - gi\|61506864\|dbj\|BAD36836.2\| carbonic anhydrase 2 [Oncorhynchus mykiss], dbj\|BAD36835.1\| carbonic anh...	312.0	[0..1]	[240..1]
gi\|60831506 - gi\|60831506\|gb\|AAX36973.1\| carbonic anhydrase II [synthetic construct]	310.0	[0..1]	[240..1]
gi\|109086851 - gi\|109086851\|ref\|XP_001096360.1\| PREDICTED: carbonic anhydrase II [Macaca mulatta]	310.0	[0..1]	[240..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGHWSYCDD DECGPNRWPT GQHQSPINID LGEVERKDTH DGIKFVNYDH PIQGDIVNNG  60
   61 HSVQMTPELR SEHPEIYGGG LDQVYRLVQY HFHWGENDNE GSEHTLGGLR YPAELHLVHQ 120
  121 GVEDPGKLAV VGVFLQLGKE GKALSNEERV LGKLCNPETV TRVENVRLSE KLPANKRSFW 180
  181 RYEGSLTTPP CSEIVTWTIF TEPVTVTHDQ LELFRQVQDI EKRPIKKNYR PTQNLNDRKI 240
  241 VHIVAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.69897
Match:	2nwyA
Description:	No description for 2nwyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits