YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-25
Organism:	Caenorhabditis elegans
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-25.

Description	E-value	Query Range	Subject Range
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	156.0	[0..4]	[113..191]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	150.0	[0..1]	[113..75]
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	149.0	[0..9]	[113..76]
gi\|125778350, gi... - gi\|54639683\|gb\|EAL29085.1\| GA19768-PA [Drosophila pseudoobscura], gi\|125778350\|ref\|XP_001359933.1\| G...	146.0	[0..1]	[113..1]
gi\|108884721, gi... - gi\|157103245\|ref\|XP_001647889.1\| ribosomal protein S25, putative [Aedes aegypti], gi\|157103243\|ref\|X...	144.0	[0..1]	[115..83]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	141.0	[0..1]	[113..14]
gi\|119569329, gi... - gi\|88988836\|ref\|XP_942473.1\| PREDICTED: similar to 40S ribosomal protein S25 [Homo sapiens], gi\|1195...	137.0	[0..1]	[113..1]
gi\|60652757 - gi\|60652757\|gb\|AAX29073.1\| ribosomal protein S25 [synthetic construct]	137.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKDPKGG KAPPSKKKEG SGGGKAKKKK WSKGKVRDKL NNMVLFDQAT YDKLYKEVIT  60
   61 YKLITPSVVS ERLKVRASLA KAGLKELQAK GLVKCVVHHH GQVVYTRATK EADVIVE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	2j5oA
Description:	No description for 2j5oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits