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View Structure Prediction Details

Protein: inx-7
Organism: Caenorhabditis elegans
Length: 556 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-7.

Description E-value Query
Range
Subject
Range
gi|39593213, gi|... - gi|39593213|emb|CAE64682.1| Hypothetical protein CBG09460 [Caenorhabditis briggsae], gi|187031833|em...
gi|157763564 - gi|157763564|ref|XP_001674124.1| Hypothetical protein CBG09460 [Caenorhabditis briggsae AF16]
522.0 [0..1] [556..1]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVFRVLNTV PYTNRTGAKD LVASIHSFLT SNLLVGLAVL ISWKQFGGTP IECMVPLDFT  60
   61 SAWVQYSNNY CWAQPTYFIP FTEELVEQVV DPADVVADGI TIGNGGNRPR FVKKGGEKIS 120
  121 YYQWMSFFLL FEAACFRLPC FIWKYFA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSGMQVGEI LRVASDENNA VPLVKKANID ALCIHLRGVL RFQKRLKLKK IVPHKILRFL  60
   61 NIKYSAYYVT FIYFVAKVAF LLNVILQSKL LNKYMLPHDR QQNFGFDMWK TIFYGSTNGN 120
  121 ETWRENGVFP RVTLCDFETR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [288-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMGNVQMHTV QCVLLLNLFT EKIFVFLWAW YILLTAFTVG NLFSWLFAVF NETYNEHFIL  60
   61 NHLEMCETPF DKDDLKNREH VTRFITLYLG TDGLFLLQLI AQHADVVFTT ELIAALFKTY 120
  121 IE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [410-556]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEAQRATLKQ MNAVLPLLRP NDESQVESGK NTAPSTSHNV RRRGTEQLEK NVKSRQGSLS  60
   61 TQLRPFNSFE EPDQPTKKFD DSSSEDENSK KGSKKPSPTK KKASSKNSPQ SSSNSRRPSL 120
  121 AHTASPAFTH HHEPDSKIPK TAEKKHW

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.94
Match: 2fj7I
Description: No description for 2fj7I was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle