YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp-17
Organism:	Caenorhabditis elegans
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-17.

Description	E-value	Query Range	Subject Range
hsp-17 - status:Confirmed UniProt:Q7JP52 protein_id:AAQ62453.1	139.0	[0..1]	[149..1]
gi\|39590320, gi\|... - gi\|39590320\|emb\|CAE66059.1\| Hypothetical protein CBG11272 [Caenorhabditis briggsae], gi\|187030458\|em... gi\|157760044 - gi\|157760044\|ref\|XP_001672364.1\| Hypothetical protein CBG11272 [Caenorhabditis briggsae AF16]	133.0	[0..1]	[149..1]
HSP16_SOYBN - 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1	132.0	[0..3]	[145..11]
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	131.0	[0..3]	[145..257]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	130.0	[0..3]	[145..5]
gi\|87240494 - gi\|87240494\|gb\|ABD32352.1\| Heat shock protein Hsp20 [Medicago truncatula]	130.0	[0..3]	[145..11]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	129.0	[0..3]	[145..9]
HSP12_MEDSA - 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	129.0	[0..3]	[145..11]
gi\|23308655, gi\|... - gi\|52789217\|gb\|AAH83177.1\| Crystallin, alpha A [Danio rerio], gi\|23308655\|ref\|NP_694482.1\| crystalli...	128.0	[0..6]	[149..19]
CRYAA_LOXAF - Alpha-crystallin A chain OS=Loxodonta africana GN=CRYAA PE=1 SV=1	127.0	[0..5]	[147..20]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRFPPFSP FFNHGRRFFD DVDFDRHMIR PYWADQTMLT GHRVGDAIDV VNNDQEYNVS  60
   61 VDVSQFEPEE LKVNIVDNQL IIEGKHNEKT DKYGQVERHF VRKYNLPTGV RPEQIKSELS 120
  121 NNGVLTVKYE KNQEQQPKSI PITIVPKRN

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Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3360635562029	bayes_pls_golite062009
protein binding	0.743263427072441	bayes_pls_golite062009
unfolded protein binding	0.540503020005284	bayes_pls_golite062009
catalytic activity	0.260308151913118	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: