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View Structure Prediction Details

Protein: CE04619
Organism: Caenorhabditis elegans
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04619.

Description E-value Query
Range
Subject
Range
gi|7549210 - gi|7549210|gb|AAF63787.1|AF142406_1 200 kDa antigen p200 [Babesia bigemina]
188.0 [0..2] [451..254]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDVSIGWM YEGAKGNVHR EDYLLGKKVD KNFEKYSDVV NAQKAEAIDS IVGTRAVFNS  60
   61 GQSTGLKTSS LQKDIIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEDPFVAVKV REETKRREIM DNPLTKMRLQ AALKSMMTSK AEKSKEKKSK KDKKKKKKKR  60
   61 SSSSSDESSD ERVERKRRRS PSPKRRRRPS EKPRKRSRSP RRERPRSPKR SREESRKLSR 120
  121 KPSSSRSKSP RRSREDPRKV ARKPSRSRSR SAERLRRKSR SPRRSREEPR KMSRSRSRSA 180
  181 DKASSSRQFD SHIPRHLQQQ RSRHDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSGSESEHET RSSHRRRNSD DDERQDPRKK SYGLVEMRKR TAEEREEESR APTKEYKLVK  60
   61 IPTGRGTGNT PREPRRALSE AEKAARLAEM QQDNVKWRDE IRERNVTKGR KEDDEEKEEA 120
  121 DKNGYAPSFI RSQMREACDD MTVEKRLQSN KRGVQRAHGY MDRSFAKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle