YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-8
Organism:	Caenorhabditis elegans
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-8.

Description	E-value	Query Range	Subject Range
gi\|94367685 - gi\|94367685\|ref\|XP_979270.1\| PREDICTED: similar to ribosomal protein S8 [Mus musculus]	341.0	[0..1]	[208..212]
gi\|50751488 - gi\|50751488\|ref\|XP_422423.1\| PREDICTED: similar to ribosomal protein S8 [Gallus gallus]	334.0	[0..1]	[208..58]
gi\|68364966 - gi\|68364966\|ref\|XP_686530.1\| PREDICTED: similar to ribosomal protein S8 [Danio rerio]	328.0	[0..2]	[208..29]
gi\|60417164 - gi\|60417164\|emb\|CAH57693.1\| 40S ribosomal protein S8 [Platichthys flesus]	328.0	[0..1]	[208..1]
RS8_MOUSE - 40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2 RS8_BOVIN - 40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3 RS8_RAT - 40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2 ENSCJAT00000008064 - null gi\|73977187, gi\|... - gi\|73977187\|ref\|XP_862327.1\| PREDICTED: similar to ribosomal protein S8 isoform 8 [Canis familiaris]... tr\|G3GYR9\|G3GYR9... - 40S ribosomal protein S8 OS=Cricetulus griseus GN=I79_002981 PE=3 SV=1 RS8_MACFA - 40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3 RPS8 - ribosomal protein S8 gi\|109003617 - gi\|109003617\|ref\|XP_001099080.1\| PREDICTED: similar to ribosomal protein S8 isoform 2 [Macaca mulatt... gi\|114681875, gi... - gi\|55644275\|ref\|XP_511118.1\| PREDICTED: similar to ribosomal protein S8 [Pan troglodytes], gi\|555862... gi\|55715968 - gb\|AAH86200.1\| Unknown (protein for MGC:98675) [Xenopus laevis]	325.0	[0..1]	[208..1]
RS8_ICTPU - 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3	323.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISRDSWHK RYKTGATQPV PHKKRKFELG RPAANTKIGA HRVRLVRTRG GNEKYRALRL  60
   61 DSGNFSWASE QTTRKTRIVD TMYNATNNEL VRTKTLVKGA IISVDAAPFR QWYEAHYALP 120
  121 LARKKNAKLS EEDNAILNKK RSHHTMKKYT ERQKTAAVDA LLIEQFNTGR LLARISSSPG 180
  181 QVGQANGYIL EGKELDFYLR KIRAKKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	104.070581
Match:	PF01201.13
Description:	No description for PF01201.13 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits