YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04524
Organism:	Caenorhabditis elegans
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04524.

Description	E-value	Query Range	Subject Range
OPSD_SALPV - Rhodopsin OS=Salaria pavo GN=rho PE=2 SV=1	202.0	[0..1]	[292..1]
OPSD_ORYLA - Rhodopsin OS=Oryzias latipes GN=rho PE=2 SV=1	202.0	[0..1]	[292..1]
gi\|56548606 - gi\|56548606\|gb\|AAV93304.1\| rod visual pigment [Paralabidochromis cyaneus]	202.0	[0..1]	[289..1]
OPSD_BOVIN - Rhodopsin OS=Bos taurus GN=RHO PE=1 SV=1 gi\|18148871 - gi\|18148871\|dbj\|BAB83621.1\| rhodopsin [synthetic construct]	202.0	[0..1]	[289..1]
gi\|114690659 - gi\|114690659\|ref\|XP_001144896.1\| PREDICTED: opsin 1 (cone pigments), long-wave-sensitive (color blin...	202.0	[0..9]	[292..142]
gi\|63020241 - gi\|63020241\|gb\|AAY26028.1\| rod opsin [Labeotropheus fuelleborni]	201.0	[0..1]	[289..1]
gi\|5931796 - gi\|5931796\|emb\|CAB56646.1\| rod opsin [Anguilla japonica]	201.0	[0..1]	[289..1]
OPSD_CALPD - Rhodopsin OS=Caluromys philander GN=RHO PE=1 SV=1	201.0	[0..1]	[289..1]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHIVLPGCS APEKVLFKPN STFDNFFRKF DELVYKLSTF LITILYFAFN VFHLIILSRP  60
   61 SLISLVVSKE MILIAVCGVL NGIIGILKSV EEIIDHELQC AHSYSYYILV LANFVIFQVL 120
  121 NQIILWEIVY ITFLRATVIL EVRYGMKTEN LKLYMRRFIT VLFTIFLINH TVRIFFHRIE 180
  181 EVTDNDMKVR ELGIPCDSEK IYIIAAFAGD CLRRILLTIA GLTSLIIPIL IMIILSIFLI 240
  241 IELRSSSETL QKTQESSTRQ NSAARALLLF LCFYVLAELP YVLLFSVGLY NPADFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits