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View Structure Prediction Details

Protein: chtl-1
Organism: Caenorhabditis elegans
Length: 771 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chtl-1.

Description E-value Query
Range
Subject
Range
gi|39598050, gi|... - gi|39598050|emb|CAE68742.1| Hypothetical protein CBG14673 [Caenorhabditis briggsae], gi|187028055|em...
gi|157769799 - gi|157769799|ref|XP_001676720.1| Hypothetical protein CBG14673 [Caenorhabditis briggsae AF16]
767.0 [0..1] [771..1]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKKHRTIP AVEVYEKSDG FPMPTAPPMS PSRMDGVYPS HHVPPLHQAY HVQPASANHV  60
   61 PDQIARFNVI KPDRLAKRH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPQLYTKRGC TDVFCCFLFF VFLCGWVVVA GFGIMWGDPQ RLIYPTDSEF RRCGVNLEGS  60
   61 YNFSKRPYLF YFDLTKCISY ATALGGCQTT QLCVKECPST YFSYLQLRTA SVSEIQNKMK 120
  121 SVVYCTDDVD KTTVTTFQAL QNLVQRGKCV SYTVKSVPVL QRCFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [245-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAIFNAVDNV NNVLNSSNSL DYLKRTFGDD ALIPQDIQIT GQSSEVMKSV VEDQPVTHKV  60
   61 IHDLSQTWWQ TLILIFAAGI LSFIWTVIMR LLGSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [340-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIWLSILIVL VALGFGAGFS WLKWNTLKTT GAIDDYSFHP AFDAYFEMPT TWLVVAIATS  60
   61 VLLLIFLLVI LFIRQRISIA CALISESSKA IGSMMSTLLF PLFPFLLHIG VFALWGSIAI 120
  121 WLASSGQEVC RLKETNGQVY NTSTKC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [486-597]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DCTAKVTGCT YVGIEKESET IFWLQVYNLF AFFWLSCFVT ALGDIALAGA FASYYWARDK  60
   61 RHDVPTFPVI RALNRAIRYN LGSIAFGSLI IAIVKIIRVL LEYIDHKLGK SQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [598-771]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKAVKWFLMC LKCCFWCLEV FFKFLTKNAY IMIAIYGKNF FSSAKDSFLL ITRNIVRTVV  60
   61 VHKVAGILLF LGKSMITLGM GILSFYYFSG RWVVEGVPKV DLYYYFVPIV IVVIGSYFMA 120
  121 DLFFDVYEMA VDTTFICFLE DSEQNDGSLE RPFFMSEKLL EILGNKNDIP LHSK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle