YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04489
Organism:	Caenorhabditis elegans
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04489.

Description	E-value	Query Range	Subject Range
gi\|475784 - gi\|475784\|gb\|AAC37226.1\| 85 kDa merozoite protein [Babesia bovis]	96.0	[0..3]	[71..371]
gi\|67087524, gi\|... - gi\|67153391\|ref\|ZP_00415136.1\| DEAD/DEAH box helicase:Helicase, C-terminal:Type III restriction enzy... gi\|67153391 - gi\|67153391\|ref\|ZP_00415136.1\| DEAD/DEAH box helicase:Helicase, C-terminal:Type III restriction enzy...	92.0	[0..13]	[78..1407]
gi\|124504959, gi... - gi\|4493942\|emb\|CAB38978.1\| CSP and TRAP-related protein (CTRP) [Plasmodium falciparum 3D7], gi\|16805...	78.0	[0..2]	[49..509]
gi\|7512168, gi\|1... - pir\|\|T30886 integumentary mucin B.1 - African clawed frog (fragment), gi\|1839052\|emb\|CAA69604.1\| int...	77.0	[0..1]	[115..1352]
gi\|33866098, gi\|... - gi\|33866098\|ref\|NP_897657.1\| hypothetical protein SYNW1564 [Synechococcus sp. WH 8102], gi\|33639073\|...	77.0	[0..2]	[58..527]
gi\|66357500 - gi\|66357500\|ref\|XP_625928.1\| hypothetical protein [Cryptosporidium parvum Iowa II] gi\|46226810 - gi\|46226810\|gb\|EAK87776.1\| hypothetical protein with signal peptide and repeats, within large locus ...	76.0	[0..1]	[61..683]
gi\|60469382 - gi\|60469382\|gb\|EAL67376.1\| hypothetical protein DDB0206498 [Dictyostelium discoideum] gi\|60469382, gi\|... - gi\|66814360\|ref\|XP_641359.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60469382\|gb\|EAL...	76.0	[0..3]	[62..272]
gi\|92089902, gi\|... - gi\|92089902\|ref\|ZP_01274824.1\| conserved hypothetical protein [Lactobacillus reuteri 100-23], gi\|918...	68.0	[0..3]	[64..1749]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPIPIPIP APVPVPAPVP QPVPVPMPMP MPMPMPMPVP VPVPVQSNCC SCCMPVCMSV  60
   61 CMRGGCGYGG GGYSSGYSSG GCYGGGGGSS CGCNSFGYGR RKRATLVKNN AVAIRRKQID 120
  121 MVVRD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits