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View Structure Prediction Details

Protein: ags-3
Organism: Caenorhabditis elegans
Length: 579 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ags-3.

Description E-value Query
Range
Subject
Range
gi|123228068, gi... - gi|26351199|dbj|BAC39236.1| unnamed protein product [Mus musculus], gi|123228068|emb|CAM20328.1| G-p...
329.0 [0..3] [578..25]

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Predicted Domain #1
Region A:
Residues: [1-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDRSCYKLT QEGERLFRMQ KYEKGIDLLK KALEVGTDDF SLLSAIYCQL GNAHTMLKDY  60
   61 EQALKFHTYD ILVERLLGNK EGEAKSCANL GNIFKMKGAY NDALTFTFKQ LDFAEELGDR 120
  121 VLKSRAYYNI ATIYVERGRC TKLEAAEEKN DAKNAEATSD FENAAKYFML NLEMSEKSED 180
  181 ALTMGRCYGS LGNTYYCLGD YDQSIHFHKL RLELSQQYGD RASMRRAHAN IANCHALKSN 240
  241 MPLAIQHYKL AYNLAIEIGN KTEEAQMAYS LANALYIGKE VQKAITYFQR HLKIARSLED 300
  301 ISGQLRSYYS LALSFNNLCE RRKALYFLVL AKRSSLQVND TSALTDIDNL LNEILEAGQE 360
  361 DVLVDDIELI IDESADPAPA DIEHRELRLT YFQKRNIHDK PVNTPEDPLA EDRYEKEEFF 420
  421 DMLAKLQSKR MNDQRVDASV LSSNLDFRVR QVDTEPDNSS TDGSEVLIDL LLNAQGRRMD 480
  481 DQRAPFLPGL NPNGQIILRR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #2
Region A:
Residues: [501-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNTDPGNEEL DEHLVEWLMR VQGERLDEQR SELPPIKPEG QEEVDKKKEE DVTAIVMRMQ  60
   61 AGRLEDQRAH LPNIPTSKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle