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View Structure Prediction Details

Protein: CE04450
Organism: Caenorhabditis elegans
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04450.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
288.0 [0..2] [455..1407]

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Predicted Domain #1
Region A:
Residues: [1-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGDTIETGE KILDDGSIGQ SNFDQTEAML PTPSDKTDWK SIYLAGSCAF IQATQFAIFF  60
   61 TSMYPYILTL EHNVTQTSFG IVVAMYSVSQ AIFSPVFGFW SNRIGQVRFP LIVGFIVMAF 120
  121 GNITYLSLQY LSSNHLYVMM LARLIAGGGT GNMSLLRAYA STASTSKDRS RAIACVSGGI 180
  181 ALGTMMGPGL QLLFSPLGEN GINILGLNIS IYTSPALFCL ILNVTGLLIV KLAFVEKYII 240
  241 NHGKNIVQDE ENGEKKIKKL ASPDFIAILL CIITRFSQIF LNTTIESIGS AYTMMMFGLE 300
  301 KEESVSINAG VHTVAGSIAA FMFICFIFTG VRRYMKNRVF TFISLSIPLV WLIATYPYKF 360
  361 YSDHVQLMTN GSNANCDTEK YSWCTDLTKV NEYVYYIGFI MVFGVAFSFM NITVTTLFSK 420
  421 VIGPRPQGTY QGVYQMAGSF GRMLAPLLMS YVYTLYGPSI PWLILIVNLV VLISAWIILR 480
  481 VRMVPFEKYE TKKIEPLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.39794
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle