YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04428
Organism:	Caenorhabditis elegans
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04428.

Description	E-value	Query Range	Subject Range
h0012206 - null gi\|104487297 - gi\|104487297\|ref\|NP_570924.2\| protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor...	137.0	[0..12]	[144..1285]
gi\|74184363 - gi\|74184363\|dbj\|BAE25714.1\| unnamed protein product [Mus musculus]	136.0	[0..12]	[144..481]
gi\|9507011, gi\|2... - gi\|9507011\|ref\|NP_062013.1\| protein tyrosine phosphatase, receptor type, S [Rattus norvegicus], gi\|2...	136.0	[0..12]	[144..1238]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDTPESVLK PPDNNGKPKP SHEKDAKVKK NDDDDDLGSE KKDLEPKEKE QRAEMIKKWA  60
   61 SAVMMSTPQQ LTKEYKAVGN IFPDSECTAF LKFKDLNRYP NIQCWDRGRF TLAGDENFYI 120
  121 HANFVKICTK PEREIFSIFK KSYKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.154902
Match:	2fh7A
Description:	Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits