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View Structure Prediction Details

Protein: vha-12
Organism: Caenorhabditis elegans
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-12.

Description E-value Query
Range
Subject
Range
gi|110456744 - gi|110456744|gb|ABG74839.1| ATPase beta subunit [Menodora longiflora]
559.0 [0..4] [491..1]

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Predicted Domain #1
Region A:
Residues: [1-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVDVNQPI TGHKSAIIRN YNTNPRLIYQ TVCGVNGPLV ILNDVKFPQF SEIVKITLPD  60
   61 GSKRSGQVLE ISKNKAVVQV FEGTSGIDAK NTICEFTGDI LRTPVSEDML GRIFNGSGKP 120
  121 IDKGPPVLAE DFLDINGQPI NPWSRIYPEE MIQTGISAID VMNSIARGQK IPIFSASGLP 180
  181 HNEIAAQIVR QGGLVQLPDR PHEQTNFAIV FAAMGVNMET ARFFKQDFEE NGSMENVCLF 240
  241 LNLANDPTIE RIITPRIALT SAEFLAYQCK KHVLVVLTDM SSYAEALREV SAAREEVPGR 300
  301 RGFPGYMYTD LATIYERAGR VEGRDGSITQ IPILTMPNDD ITHPIPDLTG YITEGQIYVD 360
  361 RQLHNRLIYP PINVLPSLSR LMKSAIGEGM TREDHSDVSN QLYACYAIGK DVQAMKAVVG 420
  421 EEALSSDDLL YLEFLTKFEK NFITQGHYEN RSVFESLDIG WQLLRIFPRE MLKRIPESTL 480
  481 EKYYPRGGAK E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 109.0
Match: 2c61A
Description: No description for 2c61A was found.

YRC Informatics Platform - Version 3.0
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