YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04423
Organism:	Caenorhabditis elegans
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04423.

Description	E-value	Query Range	Subject Range
PTPRS_RAT - Receptor-type tyrosine-protein phosphatase S OS=Rattus norvegicus GN=Ptprs PE=1 SV=2	192.0	[0..1]	[164..1437]
gi\|114556010 - gi\|114556010\|ref\|XP_001173753.1\| PREDICTED: protein tyrosine phosphatase, receptor type, F isoform 1...	192.0	[0..1]	[165..1428]
PTPRF_MOUSE - Receptor-type tyrosine-protein phosphatase F OS=Mus musculus GN=Ptprf PE=1 SV=1	191.0	[0..1]	[165..1428]
gi\|249840 - gi\|249840\|gb\|AAB22251.1\| LAR, leukocyte common antigen-related protein=transmembrane receptor phosph...	191.0	[0..1]	[165..1417]
gi\|109003419 - gi\|109003419\|ref\|XP_001095521.1\| PREDICTED: protein tyrosine phosphatase, receptor type, F [Macaca m...	190.0	[0..1]	[165..1441]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSEQCGCG LLVVVIFASR VQLHLNSRDN VGFVDLEDHR VYTESCTEIE IGGKSKDKIT  60
   61 HRVLKVVVKA TGQESKLNHY QWASWPDHGM PDSCDTAHRL LSAVKKDKKP VIAHCSAGVG 120
  121 RTGTLVLIES MIAALRHPRK QNVKDSFVLL RKDRARSVRV IIYKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2nv5A
Description:	No description for 2nv5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits