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View Structure Prediction Details

Protein: col-110
Organism: Caenorhabditis elegans
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-110.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
263.0 [0..42] [303..1410]

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Predicted Domain #1
Region A:
Residues: [1-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEYSHLRI QRFIAFSVAI VSLVLTVGAM VTLPLAYHYV NQLRNSLERQ FVECNDVVRT  60
   61 IYEGVDELSV LIATSNHTRS IRGAKPRRRF DEDETTGTCD GCCIPGAPGP SGTPGRHGRH 120
  121 GAPGAPGRPG NPGEPPRGPC DPTLASPCDC PAGEPGEPGP RGSPGNNGLP GLKGRRGFDG 180
  181 LDGRPGRPGK TGIDGVPGTK GEDGADGEPG EVDTSDVGPP GDDGDEGQSG EAGQPGNDGR 240
  241 DGKPGQVGPP GPPGKDGVDG ENGNDGDLGE AGIQGRPGEE GICPKYCAID GGVFFDSGSR 300
  301 RRRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.045757
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle