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View Structure Prediction Details

Protein: pes-8
Organism: Caenorhabditis elegans
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pes-8.

Description E-value Query
Range
Subject
Range
gi|39596215, gi|... - gi|39596215|emb|CAE69852.1| Hypothetical protein CBG16180 [Caenorhabditis briggsae], gi|187026650|em...
gi|157767406 - gi|157767406|ref|XP_001667183.1| Hypothetical protein CBG16180 [Caenorhabditis briggsae AF16]
475.0 [0..140] [440..36]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYFAGPPK VDDIPSNEYI FTQYTIGETY TFEVHLDETT QNDYIINWCN MNGDQLIGAR  60
   61 GCVNCNQCGY E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVETHSYNRP GAIKRTLVPF VAAHTTINFE CEIEMYICSG CAERSCETSP LALTSKLTPF  60
   61 GKSTTVALMY PPAGYAMPMG AYP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [155-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPIPPNIYPT PPFGGFHMPP HSPPHVQPPP VVNPGAVGTY TGYGGAWPWW VWLLIILLLL  60
   61 LLLCCLLALC FAAFMKRKRE KKAAAVTVVD GKDCATGTDR VSVTCVGTDT QDIVKVQPAV 120
  121 VLGADSLQSH HQQHHQHNQY SRNQAEYDQG SVMAGGTYSL REGMIHEGYT RTLPRESYST 180
  181 NDRYASRDRF ERQSQDKYTD RSSYRNFAYE RDMGRVEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [373-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGFDEVETR ERTYCLSDDD QEIVEKNVKR THTTRYVTES REYDQDHDNE ERMRGDEYHH  60
   61 ATYTHSLPIP YPYFAHHWPA IFSFESLFFL TFLVM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle