YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE04396
Organism: Caenorhabditis elegans
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04396.

Description E-value Query
Range
Subject
Range
gi|67668083, gi|... - gi|67668083|ref|ZP_00465278.1| General substrate transporter:Major facilitator superfamily [Burkhold...
197.0 [0..1] [483..1008]

Back

Predicted Domain #1
Region A:
Residues: [1-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDEETEGDV VPVRSCDDIV IPRRSIRPDH DISFTKKIAF GIGHFYNDLC ASMWFTYFMI  60
   61 YMEKVLKFQS SRAGMLMLIG QVTDAISTPL VGIFSDSNIL PACFDKIGRR MSWHLIGTVL 120
  121 VSLSFPMIFN KCFLCKSTTS EWLKVLWFVP FIMVFQFGWA SVQISHLALI PELSSVPASR 180
  181 ATMNSLRYAF TVIANLSVYF ALAWLLSEST GHTSIGPWDF SHFRLAGWLV VVLGITVAFV 240
  241 FYAFTREPTN YRRFSRLNSF SSDASELVRM HWTSWFGHVQ FYQIALLYML SRLYINISQV 300
  301 YFPFYITMTQ NYEKKYVAIL PMVAYLSSFS VSMVNSLPVV SKLSKKILYS FGLASGMLSC 360
  361 AVMMLDLPGW KIYALAVGIG IAQAILLITS LSITADLINK NTESGAFVYG AMSFFDKLSN 420
  421 GIAYQLIELW TPAYDALKPH EVSAIFYRRV MVFVPGTCLV LAFLVLLSLA PFKIGERRRA 480
  481 RPEDEQAIME DQDDIYPEIV E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.30103
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle