YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04389
Organism:	Caenorhabditis elegans
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04389.

Description	E-value	Query Range	Subject Range
DUS18_MOUSE - Dual specificity protein phosphatase 18 OS=Mus musculus GN=Dusp18 PE=1 SV=1	153.0	[0..4]	[178..13]
gi\|50758396 - gi\|50758396\|ref\|XP_415902.1\| PREDICTED: similar to Dual specificity protein phosphatase 14 (Mitogen-...	151.0	[0..1]	[177..179]
gi\|109488713 - gi\|109488713\|ref\|XP_340862.3\| PREDICTED: similar to Dual specificity protein phosphatase 14 (Mitogen...	151.0	[0..4]	[177..160]
gi\|74474913 - gi\|74474913\|dbj\|BAE44440.1\| MAP kinase phosphatase 1 [Solanum tuberosum]	150.0	[0..10]	[182..115]
gi\|38322721, gi\|... - gi\|38322721\|gb\|AAR16274.1\| dual specificity phosphatase 6 [Takifugu rubripes], gi\|17488591\|gb\|AAL403...	148.0	[0..1]	[164..199]
gi\|38322768 - gi\|38322768\|gb\|AAR16317.1\| dual specificity phosphatase 6 [Tetraodon nigroviridis]	148.0	[0..1]	[164..200]
gi\|37951311 - gi\|37951311\|dbj\|BAD00043.1\| MAP kinase phosphatase [Nicotiana tabacum]	147.0	[0..10]	[181..115]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQNKALLS ITQVRPHLFL AGYGCITPSL LKQYNITHGV DCTNLKTKPI KGLDRIEVPV  60
   61 DDNTLAKITQ YFEPVVKYIE DAKQQGHNTV IYCAAGVSRS ATLTIVYLMV TENLSLEEAY 120
  121 LQVNQVRPII SPNIGFWRQM IDFEKQRNGN ASVELISGRM ARPVPSVYLR RVYTIIDVNI 180
  181 IHVSLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.154902
Match:	2esbA
Description:	No description for 2esbA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits