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View Structure Prediction Details

Protein: CE04349
Organism: Caenorhabditis elegans
Length: 654 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04349.

Description E-value Query
Range
Subject
Range
gi|157769367 - gi|157769367|ref|XP_001676504.1| Hypothetical protein CBG14348 [Caenorhabditis briggsae AF16]
gi|39597834, gi|... - gi|39597834|emb|CAE68526.1| Hypothetical protein CBG14348 [Caenorhabditis briggsae], gi|187027839|em...
517.0 [0..26] [653..26]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLALKLFPL FLFLLLLLPI DSIPIIKSLL NPSTPHANSQ AYVETSDVTS QFTIYASNIS  60
   61 SCLFKTAVIP CECFLQVSND YRLEENGKLL SKFAVSPPDI KIFTPSTHEM LNELTVHILP 120
  121 KLCREDLSDI QLEYRSFQVF PG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [143-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEESSWKTVS AVAKTLKDTK TSLIFGCKHF SDPGYYRVSI RLSLVNYTVQ ADKWIVVNRT  60
   61 NQNALRLRED SIFPHCSSDY TVGWSLAECS MEHLHYRLRI LAVPEGAKNH DDGAVYIEEI 120
  121 GIAPDMHHLK ISCSQFDIIH EKYCFELVSV NRNSSVSHTW HSVCVSTEPV ERKLGGWSAW 180
  181 SEWSACSETC GSGRQRRVRF CNEPVPKRSK YCDGPLIETQ ECTLTKCPEA MMPQSLSTNC 240
  241 SCGCALSLEA SSFFASSRHS RMCEGNQTWT LPKMDGFKIA DFTIRKQGDA KGKLFFFLRA 300
  301 PYQELVWSSD SHQEYQFSLP MSAPIFVVLW SKSNDTARLK QIDDGFTVSY SVRDADSSPT 360
  361 VAKIDSCQPF CPETMAIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 1w0rA
Description: Solution structure of dimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [521-654]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMAIIFICII FIPPLVCAAV TASMRRNTSP EVPLMDNKYD SEMIRSGNTE STHVSSRNYV  60
   61 AKRSIGIQLS VQSTPRTARA CLSHESPVPP RGQSSLSECD ELEYDYYDGT TFPGSFLAPV 120
  121 QDVMYSQIDI DQVK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.958
Match: 1fazA
Description: Prokaryotic phospholipase A2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.253768189456285 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle