YRC Public Data Repository - Protein Structure Prediction

Protein:	dylt-2
Organism:	Caenorhabditis elegans
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dylt-2.

Description	E-value	Query Range	Subject Range
gi\|79156971 - gi\|79156971\|gb\|AAI08236.1\| TCTEX1D2 protein [Bos taurus]	169.0	[0..4]	[123..69]
gi\|157817963, gi... - gi\|62658006\|ref\|XP_573301.1\| PREDICTED: similar to CG5359-PA [Rattus norvegicus], gi\|157817963\|ref\|N...	168.0	[0..4]	[123..27]
TC1D2_MOUSE - Tctex1 domain-containing protein 2 OS=Mus musculus GN=Tctex1d2 PE=1 SV=1	168.0	[0..4]	[123..26]
gi\|22749513, gi\|... - gi\|22749513\|ref\|NP_689986.1\| Tctex1 domain containing 2 [Homo sapiens], gi\|18088953\|gb\|AAH21177.1\| T...	165.0	[0..4]	[123..24]
gi\|55621782 - gi\|55621782\|ref\|XP_516972.1\| PREDICTED: hypothetical protein [Pan troglodytes] TCTEX1D2 - Tctex1 domain containing 2	165.0	[0..4]	[123..24]
gi\|109054279 - gi\|109054279\|ref\|XP_001100846.1\| PREDICTED: similar to CG5359-PA [Macaca mulatta]	165.0	[0..4]	[123..23]
gi\|50752295 - gi\|50752295\|ref\|XP_422724.1\| PREDICTED: hypothetical protein [Gallus gallus]	146.0	[0..9]	[123..14]
gi\|7512072, gi\|3... - pir\|\|JC6573 outer-arm dynein light chain 3 - sea urchin (Anthocidaris crassispina), gi\|3336986\|dbj\|... gi\|115951344, gi... - gi\|72009103\|ref\|XP_783725.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|115...	143.0	[0..17]	[120..10]
gi\|2760163 - gi\|2760163\|dbj\|BAA24185.1\| outer arm dynein light chain 1 [Anthocidaris crassispina]	142.0	[0..4]	[122..57]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDANDRNFV LRPTPGQKFR PKAVAGMIQE ILGEKLGALT IYNVDEAELV SKDISASIRE  60
   61 RLKGLQLPRY KYVIQTMIAE QCGNGATTAV QCVWDEDCDG YLTQRYVTGS IWCEVLVFAI 120
  121 FHY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1ygtA
Description:	Dynein Light Chain TcTex-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits