| Protein: | apl-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 686 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apl-1.
| Description | E-value | Query Range |
Subject Range |
|
|
390.0 | [0..6] | [683..1] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MTVGKLMIGL LIPILVATVY AEGSPAGSKR HEKFIPMVAF SCGYRNQYMT EEGSWKTDDE 60
61 RYATCFSGKL DILKYCRKAY PSMNITNIVE YSHEVSISDW CREEGSPCKW THSVRPYHCI 120
121 DGE
|
| Detection Method: |  |
| Confidence: | 43.522879 |
| Match: | 1mwpA |
| Description: | N-terminal domain of the amyloid precursor protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [124-201] |
1 11 21 31 41 51
| | | | | |
1 FHSEALQVPH DCQFSHVNSR DQCNDYQHWK DEAGKQCKTK KSKGNKDMIV RSFAVLEPCA 60
61 LDMFTGVEFV CCPNDQTN
|
| Detection Method: | |
| Confidence: | 11.30103 |
| Match: | 1owtA |
| Description: | Amyloid beta a4 protein copper binding domain (domain 2) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [202-374] |
1 11 21 31 41 51
| | | | | |
1 KTDVQKTKED EDDDDDEDDA YEDDYSEESD EKDEEEPSSQ DPYFKIANWT NEHDDFKKAE 60
61 MRMDEKHRKK VDKVMKEWGD LETRYNEQKA KDPKGAEKFK SQMNARFQKT VSSLEEEHKR 120
121 MRKEIEAVHE ERVQAMLNEK KRDATHDYRQ ALATHVNKPN KHSVLQSLKA YIR
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.48174423978677 | bayes_pls_golite062009 |
| protein binding | 1.04934183839078 | bayes_pls_golite062009 |
| identical protein binding | 0.1931087857051 | bayes_pls_golite062009 |
|
Region A: Residues: [375-686] |
1 11 21 31 41 51
| | | | | |
1 AEEKDRMHTL NRYRHLLKAD SKEAAAYKPT VIHRLRYIDL RINGTLAMLR DFPDLEKYVR 60
61 PIAVTYWKDY RDEVSPDISV EDSELTPIIH DDEFSKNAKL DVKAPTTTAK PVKETDNAKV 120
121 LPTEASDSEE EADEYYEDED DEQVKKTPDM KKKVKVVDIK PKEIKVTIEE EKKAPKLVET 180
181 SVQTDDEDDD EDSSSSTSSE SDEDEDKNIK ELRVDIEPII DEPASFYRHD KLIQSPEVER 240
241 SASSVFQPYV LASAMFITAI CIIAFAITNA RRRRAMRGFI EVDVYTPEER HVAGMQVNGY 300
301 ENPTYSFFDS KA
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
