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View Structure Prediction Details

Protein: hen-1
Organism: Caenorhabditis elegans
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hen-1.

Description E-value Query
Range
Subject
Range
gi|39586802, gi|... - gi|39586802|emb|CAE65845.1| Hypothetical protein CBG10976 [Caenorhabditis briggsae], gi|187030726|em...
gi|157770414 - gi|157770414|ref|XP_001677027.1| Hypothetical protein CBG10976 [Caenorhabditis briggsae AF16]
126.0 [0..7] [117..5]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKVIFFVC ALCSSVLSSQ DGAFGHGNHR PLNDADALTA IKPVCETDRH GNKYIPCPIH  60
   61 DINDPRNWPC IKLADLCNGK ADCPNGDDEN YFQCFYHRAR SEEYRRLMKM LEEIKGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1n7dA
Description: Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle