| Protein: | npr-11 |
| Organism: | Caenorhabditis elegans |
| Length: | 455 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npr-11.
| Description | E-value | Query Range |
Subject Range |
|
|
300.0 | [0..15] | [390..1] |
|
Region A: Residues: [1-362] |
1 11 21 31 41 51
| | | | | |
1 MGSVNESCDN YVEIFNKINY FFRDDQVING TEYSPKEFGY FITFAYMLII LFGAIGNFLT 60
61 IIVVILNPAM RTTRNFFILN LALSDFFVCI VTAPTTLYTV LYMFWPFSRT LCKIAGSLQG 120
121 FNIFLSTFSI ASIAVDRYVL IIFPTKRERQ QNLSFCFFIM IWVISLILAV PLLQASDLTP 180
181 VFVEPSCDLA LYICHEQNEI WEKMIISKGT YTLAVLITQY AFPLFSLVFA YSRIAHRMKL 240
241 RFANRNQNVT TNTNTSQRRR SVVERQRRTH LLLVCVVAVF AVAWLPLNVF HIFNTFELVN 300
301 SFSVTTFSIC HCLAMCSACL NPLIYAFFNH NFRIEFMHLF DRVGLRSLRV VIFGEQESLK 360
361 KS
|
| Detection Method: |  |
| Confidence: | 50.0 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [363-455] |
1 11 21 31 41 51
| | | | | |
1 MRTEFRSRGG CKTVTTAEPA TFQRMNESMI LSAMEQDEQL SSGGKLFVLK KYILKMFQKG 60
61 GHKQSTPASP RLGFGYNSIM TSELFSIVEG VLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
