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View Structure Prediction Details

Protein: ain-1
Organism: Caenorhabditis elegans
Length: 641 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ain-1.

Description E-value Query
Range
Subject
Range
gi|50489, gi|284... - gi|6680980|ref|NP_031769.1| procollagen, type I, alpha 2 [Mus musculus], gi|50489|emb|CAA41205.1| pr...
259.0 [0..3] [521..100]

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Predicted Domain #1
Region A:
Residues: [1-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLAKNFNN ISIDDAAWHP NDQQPVWGNN GLQQQRVWAP PVPQPQFPNR SPWQQESNDI  60
   61 EPNVNEALVG LSGTGSSSQS QWGGIQNTDY EKQIWGDPPL SDVQYPLQPH ASFGELNSLG 120
  121 GQSAPWSIGS QPAHPVWSNG GMGKESDDFW KQQQPQQHQQ YPMPLLQGAW NTGMRHGPPG 180
  181 QGQRSGPMMQ QQQDYQGGWG GPNNMGGNKQ MNRPWGQDSN RGMSGMPPRN GRPNHNQGRY 240
  241 SGNMGGGVDV SVPPPMDMHM GGGMGGMRNM GVAPNSGHGS WKNNNAGGGQ GGHGGQRNYN 300
  301 NRGGMGHSGS QSGGGSNMWN STGNNGSGGS MQQFMGGDQQ YNNPFPIGGA ADDLTLTVWH 360
  361 DPNGELKKWQ RDTGVSYWGD PEKQTDRTIS LWIVGEGADE DLETALNRCP VPQKKGEDNQ 420
  421 RFPFPVPAKR PIVVTGWGEL PENDPNNPSK SESTIFDENN RWNDLTTEQN PWYLPNQHTS 480
  481 TFSSDNTTGS WVQGGTIPLN EPGTNQHVAV AEMLKNAVDK GY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.39794
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [523-641]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDQSVTMMAN LPPMVLQYVN MLLVKIPALD SVENELKQII ESSLPEDVKE VDPQNQQKYM  60
   61 NDSQKLEHNR LIIEVTTAKI EVQEYSKKVN RALMDAGIVQ PQEQRAPAST EDYHYSFLE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle