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View Structure Prediction Details

Protein: sams-3
Organism: Caenorhabditis elegans
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sams-3.

Description E-value Query
Range
Subject
Range
METK_PHOLL - S-adenosylmethionine synthase OS=Photorhabdus luminescens subsp. laumondii GN=metK PE=3 SV=1
METK_PHOLL - S-adenosylmethionine synthase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1...
684.0 [0..4] [400..2]

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Predicted Domain #1
Region A:
Residues: [1-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQHKFLFTS ESVSEGHPDK MCDQISDAVL DAHLAQDPHA KVACETVTKT GMIMLCGEIT  60
   61 SKAVVDYQVL VRNVIKKIGY DDSSKGFDYK TCNVLVALEQ QSPEIAAGVH VDKDSDDVGA 120
  121 GDQGIMFGYA TDETEEAMPL TLLLSHKLNR KLHELRRSGE LEWVRPDSKT QVTIEYASEG 180
  181 GACVPLRVHT VVISTQHSPD ISLDDLRKEL IEKVIKAVIP ANLIDDKTIY HLNPCGSFII 240
  241 GGPMGDAGLT GRKIIVDTYG GWGAHGGGAF SGKDPTKVDR SAAYAARWVA KSLVKSGLCR 300
  301 RCLVQVSYAI GVAKPLSVMV FSFGTSALNE GELLKIVNDN FDLRPGMIIK DLDLKKPIYE 360
  361 PTAENGHFGH NEFPWEQPRH LQIDVELLKK IGGKTISNGN GIAH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2p02A
Description: No description for 2p02A was found.

Predicted functions:

Term Confidence Notes
methionine adenosyltransferase activity 8.00759843092519 bayes_pls_golite062009
transferase activity 1.78879119839291 bayes_pls_golite062009
binding 1.70779292877479 bayes_pls_golite062009
catalytic activity 1.59111295908728 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.11999094477144 bayes_pls_golite062009
protein binding 0.298204436433395 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle