YRC Public Data Repository - Protein Structure Prediction

Protein:	flp-12
Organism:	Caenorhabditis elegans
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flp-12.

Description	E-value	Query Range	Subject Range
gi\|157769553 - gi\|157769553\|ref\|XP_001676597.1\| Hypothetical protein CBG14501 [Caenorhabditis briggsae AF16] gi\|187027932, gi... - gi\|39597927\|emb\|CAE68619.1\| Hypothetical protein CBG14501 [Caenorhabditis briggsae], gi\|187027932\|em...	133.0	[0..1]	[85..1]
gi\|29825553 - gi\|29825553\|gb\|AAO92292.1\| FMRFamide-related peptide precursor [Heterodera glycines]	96.0	[0..8]	[85..9]
gi\|33621243 - gi\|33621243\|gb\|AAQ23189.1\| FMRFamide-related peptide FLP-12 precursor [Ascaris suum]	88.0	[0..21]	[85..23]
gi\|13159918 - gi\|13159918\|emb\|CAC32452.1\| FMRFamide-related peptide 2 [Globodera pallida]	82.0	[0..35]	[85..50]
gi\|60392515 - gi\|60392515\|gb\|AAX19364.1\| FMRFamide-related peptide 12 precursor [Meloidogyne incognita]	56.0	[0..41]	[84..63]
gi\|78711799 - gi\|78711799\|gb\|ABB49052.1\| FMRFamide-like peptide 12 [Meloidogyne minor]	54.0	[0..38]	[84..59]

Back

Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVQVIIALL FCLIATCATQ KVKGSPEVLP AAMYDGELSH ESVNKISAQL LNALSELEAL  60
   61 QEGNQQLKMA EKRRNKFEFI RFGRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.843	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits