YRC Public Data Repository - Protein Structure Prediction

Protein:	lmp-1
Organism:	Caenorhabditis elegans
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lmp-1.

Description	E-value	Query Range	Subject Range
gi\|187035306, gi... - gi\|39585835\|emb\|CAE61249.1\| Hypothetical protein CBG05052 [Caenorhabditis briggsae], gi\|187035306\|em... gi\|157770173 - gi\|157770173\|ref\|XP_001676907.1\| Hypothetical protein CBG05052 [Caenorhabditis briggsae AF16]	216.0	[0..1]	[237..1]
gi\|119632287, gi... - gi\|45550060\|gb\|AAS67876.1\| lysosomal-associated membrane protein 2C [Homo sapiens], gi\|169790833\|ref...	205.0	[0..17]	[237..218]
gi\|109132122 - gi\|109132122\|ref\|XP_001084005.1\| PREDICTED: lysosomal-associated membrane protein 2 [Macaca mulatta]	203.0	[0..17]	[235..288]
gi\|18091799 - gi\|18091799\|gb\|AAL58070.1\| LAMP-1 [Mus musculus]	203.0	[0..12]	[237..203]
gi\|212254, gi\|104757 - gi\|212254\|gb\|AAA65947.1\| lysosomal membrane glycoprotein A, pir\|\|A38331 LEP100 protein precursor - c...	202.0	[0..10]	[237..207]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSFVILFA FLASASATAS HYYVTNNNTG LTCIILDGDF QFNLVFNEKN TTEKFTVTFN  60
   61 ETVSVEGDCN GVRNNQSVQT LNIKFNPEGQ SARYAKEWEL DIVFGSSSNV AFEIIDYTLT 120
  121 TQRTDLVPYF GKFVRDANAA GDVTATQTNA YKCSTAKLGL VGGSTIDIKT SNVIAFAQMN 180
  181 GTVFPTDQVY EVCYLDARTN EVVPIVVGAC LAALVVVVLV GYLIGRARAK RQGYASV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits