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View Structure Prediction Details

Protein: tag-52
Organism: Caenorhabditis elegans
Length: 665 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-52.

Description E-value Query
Range
Subject
Range
gi|187027779, gi... - gi|39597774|emb|CAE68466.1| Hypothetical protein CBG14260 [Caenorhabditis briggsae], gi|187027779|em...
gi|157769247 - gi|157769247|ref|XP_001676444.1| Hypothetical protein CBG14260 [Caenorhabditis briggsae AF16]
308.0 [0..25] [665..11]

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Predicted Domain #1
Region A:
Residues: [1-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAGKEFNYY TYQSDSSQGS LQKAPDENTD YFTHKMNSYL PFDMSTLYAN QPTEKIQILQ  60
   61 EIYDTERTYV KALTIVDEIF IQQLNLWCPK SKKCFRSMFG EISAICKTHQ ILLESLQCKP 120
  121 IAEVFTKFVP FLKLYTSYAS HYPNSLKIFA KLMSRNDFRK ALTKIEEDPR VDGKKLQTYL 180
  181 IMPIQRIPRY IMLIQNLMNY STEKDDMTNL YKALSGMQGL SDQIQSCMTA YENGERLLQI 240
  241 QLNFGLDGHI LEPGRVLLKE GMLYKRELNG SANYQETVVF LFNDILLYGI KRISVMPLCK 300
  301 YEPSAILSLR HCIVQLDDIG GSIFIRCGDV GVDFTAYSLG GVTEWYNEIC DAIDNAKKLR 360
  361 DTLRKESFKQ KSLIFDKGFW QRNRDKLRNM ITADMTGNIS RVLTRKKPAP KLEESDFLRG 420
  421 QWTTSTIASN Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.39794
Match: 2pz1A
Description: No description for 2pz1A was found.

Predicted Domain #2
Region A:
Residues: [432-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKRKVATLED EEEDVFNMLS SPNLSQRKRK ATLQENTPSG VGWTASPRSS SFRKRRASTL  60
   61 RNKNADVTDG NNYLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [507-665]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLVLNDVTMT QPYTGLNAFV GTPKSRTPTD DDYDSDRDYV WTDDEEFVSD DKKIPIRRVA  60
   61 SYDEEDRRPR DFSEVRRSVA SEPPRRHLAV DDIRKLSYQQ RSLEPFNMVT EDDDEDDIID 120
  121 IKVKGERPRP WWETESAPPA IKNQKSSIID SIRNSCAIM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle