YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03850
Organism:	Caenorhabditis elegans
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03850.

Description	E-value	Query Range	Subject Range
SRD5A1 - steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) gi\|61361219, gi\|... - gi\|61361219\|gb\|AAX42014.1\| steroid-5-alpha-reductase alpha polypeptide 1 [synthetic construct], gi\|6... gi\|114598928 - gi\|114598928\|ref\|XP_001144570.1\| PREDICTED: steroid-5-alpha-reductase 1 isoform 2 [Pan troglodytes]	236.0	[0..16]	[253..21]
gi\|60653549, gi\|... - gi\|60653551\|gb\|AAX29469.1\| steroid-5-alpha-reductase alpha polypeptide 1 [synthetic construct], gi\|6...	235.0	[0..16]	[253..21]
gi\|39589767, gi\|... - gi\|39589767\|emb\|CAE67002.1\| Hypothetical protein CBG12401 [Caenorhabditis briggsae], gi\|187029531\|em... gi\|157746617 - gi\|157746617\|ref\|XP_001668404.1\| Hypothetical protein CBG12401 [Caenorhabditis briggsae AF16]	233.0	[0..1]	[253..1]
gi\|109076702 - gi\|109076702\|ref\|XP_001083405.1\| PREDICTED: similar to 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (Ster... S5A1_MACFA - 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis GN=SRD5A1 PE=1 SV=1	230.0	[0..16]	[253..25]
gi\|117558800, gi... - gi\|77404421\|ref\|NP_058766.2\| steroid-5-alpha-reductase 1 [Rattus norvegicus], gi\|206838\|gb\|AAA42102....	223.0	[0..8]	[252..11]
CE03314 - 3-oxo-5-alpha-steroid 4-dehydrogenase status:Partially_confirmed UniProt:Q20344 protein_id:CAA92173....	221.0	[0..6]	[253..5]
gi\|74003097 - gi\|74003097\|ref\|XP_535799.2\| PREDICTED: similar to 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (Steroid ...	221.0	[0..16]	[253..17]
gi\|62740082 - gi\|62740082\|gb\|AAH94046.1\| Gpsn2 protein [Mus musculus]	219.0	[0..36]	[252..125]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYAIIIIGS WLMTTCGIFV FLTLSNTEKP LGYGRYSDSL ATTRTLPPTI SWMIQGFPSF  60
   61 IIPFYLYWTN QHLTEYGSFL TCLMTFHYAY R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFVYPFIINS DNQSPVKIVI MAFGFSVLNG FIQGTWNAFY QPEFDTLHPK FFVFLGAWLF  60
   61 VIGFITHCVS DLHLITLRND YLNSYSIPRG HYFEYISCPN YFGECLQWIG YALAARSFPA 120
  121 IAFAFFIVCN LAPRAMSHHK WYQKMFGEQY PRDRHALVPG VW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	94.337242
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits