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View Structure Prediction Details

Protein: CE03807
Organism: Caenorhabditis elegans
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03807.

Description E-value Query
Range
Subject
Range
gi|39586439, gi|... - gi|39586439|emb|CAE74098.1| Hypothetical protein CBG21758 [Caenorhabditis briggsae], gi|187022368|em...
gi|157755343 - gi|157755343|ref|XP_001670015.1| Hypothetical protein CBG21758 [Caenorhabditis briggsae AF16]
629.0 [0..11] [532..1]

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Predicted Domain #1
Region A:
Residues: [1-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRIKINRKT LFILFIAYMQ LLVFLALYLN LAGPAELLNP RRQKFFGTNS ANRQNSNETY  60
   61 GTPKATKLKR APPVFQGPTN ERQKAIVRAF QHAWSGYKKY AWGHDELRPV SKRFDDSFGL 120
  121 GLTIIDSLDT AIIMGLEEET RDGVEWIREN LNVSPARSVN VFETTIRVLG GLLSGYHLTG 180
  181 EEALLEKATQ LGDNLIKAFT KSSSLIPKSD VNLDNGNACS PNRDLSSLAE ATTLQLEFRD 240
  241 LTALTGDQKY EDVAFGASEH VHNVGCKKMD GLCPFYIDGK GEFKKSSITL GARADSYYEY 300
  301 LIKQWLQTKK SIDWLRDDFI QSIAAMKKHL YRQSQPNSIW FLGEITELAQ FYPKMDHLVC 360
  361 FLSGSLVLSH LNGLDHDNEH LEMAKNIGNV CHKMYENPTG LGPEIIHFNM EDSSDMTQAD 420
  421 TYVKNLDAHS LLRPEAIEAW FYLYRVTKDK KYQEWGWKAF ESIEKYAKVE TGGYSSIDNV 480
  481 LRKKIKRRDK MESFFLAETL KYLYLLMADD QEILPLDRWV LNTEAHPLPI YN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 169.0
Match: 1x9dA
Description: Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
mannosyl-oligosaccharide mannosidase activity 7.089685350864 bayes_pls_golite062009
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity 6.95179264736435 bayes_pls_golite062009
mannosidase activity 5.20286438265852 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 4.31319275372149 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 3.65589746311782 bayes_pls_golite062009
hydrolase activity 2.67964748309919 bayes_pls_golite062009
binding 1.49199031708525 bayes_pls_golite062009
catalytic activity 1.31873306707813 bayes_pls_golite062009
cation binding 0.362242764130218 bayes_pls_golite062009
metal ion binding 0.362242764130218 bayes_pls_golite062009
protein binding 0.36081692928767 bayes_pls_golite062009
ion binding 0.355220167272296 bayes_pls_golite062009
calcium ion binding 0.121126738064555 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle