YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03789
Organism:	Caenorhabditis elegans
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03789.

Description	E-value	Query Range	Subject Range
gi\|224098594 - gi\|224098594\|ref\|XP_002187809.1\| PREDICTED: similar to phosphoribosyl pyrophosphate synthetase 1 iso... gi\|50745642 - gi\|50745642\|ref\|XP_420181.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|542151400\|ref... - PREDICTED: ribose-phosphate pyrophosphokinase 1 isoform X2 [Zonotrichia albicollis]	360.0	[0..8]	[351..1]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPERADASSG MVLLTGNSHP ELAKMVSERL EIRLGEATVY NKTNRETSVD IKQSVRGKHV  60
   61 FILQSGSKNV NNDVMELLVL IYACKTSMSK TITVIMPYLP YSKQCRMLRR SSIAMKLVAE 120
  121 MICKAGASRL VSLDLYKKEI QGFFSCPVDN LRASPFFLQH IKTNIPDYKN AIIVAKSPGV 180
  181 MNKATSYADR LRLGVAVIHG EQKDEEESGL EDGRQSPPPN VTSYDFLPAQ ESKQKPPLTV 240
  241 VGDVGGRIAI MVDDIIDDAQ SFVAAAEVLK ARGAYKIYVI ATHGVLSSDA PALLEASPIT 300
  301 EVIVTNTVPH DLQKMRCHKI KTVDVSLMIC EAIRRIFHNE SMGQLFRDVT LDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.39794
Match:	2ji4A
Description:	No description for 2ji4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits