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View Structure Prediction Details

Protein: cwn-2
Organism: Caenorhabditis elegans
Length: 360 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwn-2.

Description E-value Query
Range
Subject
Range
gi|114642843 - gi|114642843|ref|XP_522589.2| PREDICTED: similar to Wnt-5b [Pan troglodytes]
448.0 [0..15] [360..512]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPRRSCWLI LLLNLLNVQS LLDASWWSTV AQLSTALAGH NVKPVCELPG LSPGQAQVCE  60
   61 LFKDHMPAVS IGAQNAIQEC QRQFTGHRWN CSTHYSTGML GPIH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMATREAAFT YAILSAGVTH EIGRRCKQGL LTSCGCSDET KPKNVPTDWS WGGCGDNVEY  60
   61 GYKFSRDFID IREKEHDPKR NHDNGRSLMN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [195-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRNNEAGRKI LKRHRKPKCK CHGVSGACNM KTCWMQLPSM EQVGKILRNK YDKAIRVQIN  60
   61 DRGNLQLLAD EATKERKTRA LPTDLVFMDD SPDYCRFDRH SGTLGTEGRV CKRGSGGAEG 120
  121 CDSLCCGRGY NTYTQEVKSK CNCKFEWCCK VVCQTCNNVT QVDICK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle