YRC Public Data Repository - Protein Structure Prediction

Protein:	lin-14
Organism:	Caenorhabditis elegans
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-14.

Description	E-value	Query Range	Subject Range
gi\|11890741 - gi\|11890741\|gb\|AAG41199.1\| lin-14A [Caenorhabditis briggsae]	979.0	[0..1]	[530..1]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPGTSSND FVQPFSTFYP SPTSPPMHQA ALLPALTALY PQLLQLPHLK SDYLIRSDMS  60
   61 AFKEVTDLRQ AVNLILPMLP LYPTIGNGFN ATGLAAQPTL QHVIQQSLLR KRPVAQTPTV 120
  121 PQPECPGQIR PVLSSPAAAL QNVIMLNPWI MGSSLKPASP TLPNGQIPTT IGETSLQGTD 180
  181 DQTVKWIGPS SVDSNGQKTD SSAASAGDNQ NIDVIGDGSE SPTSSNHSAQ EIALMTSQQT 240
  241 FLNALKDSSF LFTNPVPTVE TA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [263-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPLRVAPPIN GTTNGTAKAG GPERKPRKPV NDDIVKIVRN QDLSEENISM FEIPVPKAIA  60
   61 SDPTFRPVSE QQIIQQIIQG KKYEEMEVGE CMIQLCKKLA EKRVFGPRLM SQTTVAGLNH 120
  121 SNYANLPIKG ICYIQHVCRK VLYDKFENEE DFWDKFREAM RKLAARCRRV RHAKKTKHNR 180
  181 EEAQAEMLSK RYGEDMPFNL NGAGLIRPKV ETVSPEANIL NSDQIKSQLE SLFAHIPKTE 240
  241 SETPLIEIIQ QNISLFTHLI RTKVESQSPP LQGPQ