YRC Public Data Repository - Protein Structure Prediction

Protein:	pir-1
Organism:	Caenorhabditis elegans
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pir-1.

Description	E-value	Query Range	Subject Range
gi\|114679093 - gi\|114679093\|ref\|XP_524398.2\| PREDICTED: protein tyrosine phosphatase, receptor type, H isoform 2 [P...	203.0	[0..11]	[260..820]
gi\|241896924, gi... - gi\|9652147\|gb\|AAF91411.1\| transmembrane-type protein tyrosine phosphatase H [Homo sapiens], gi\|24189...	202.0	[0..11]	[260..823]
gi\|1117992, gi\|8... - gi\|8394112\|ref\|NP_058965.1\| protein tyrosine phosphatase, receptor type, J [Rattus norvegicus], gi\|1...	198.0	[0..35]	[257..943]
PTPRV_MOUSE - Receptor-type tyrosine-protein phosphatase V OS=Mus musculus GN=Ptprv PE=2 SV=1	198.0	[0..7]	[253..1149]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEPRCTAIV NFLNLSHSIL ISIFSVSVMS NYHHNHNYQH RPRGYERLPG KRLPDRWNIY  60
   61 DNVGRDIDGT RFVPFKTPLD SSFFDGKNMP VELQFGVKTL ISLAQQANKQ IGLVIDLTNT 120
  121 DRYYKKTEWA DHGVKYLKLN CPGHEVNERE DLVQDFINAV KEFVNDKEND GKLIGVHCTH 180
  181 GLNRTGYLIC RYMIDVDNYS ASDAISMFEY YRGHPMEREH YKKSLYEAER KKKYGKSSGK 240
  241 SSGNSADSTI SSEQLHRNNS Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2c46A
Description:	CRYSTAL STRUCTURE OF THE HUMAN RNA guanylyltransferase and 5'- phosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits