YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03674
Organism:	Caenorhabditis elegans
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03674.

Description	E-value	Query Range	Subject Range
gi\|157755449 - gi\|157755449\|ref\|XP_001670068.1\| Hypothetical protein CBG21694 [Caenorhabditis briggsae AF16] gi\|187022421, gi... - gi\|39586386\|emb\|CAE74043.1\| Hypothetical protein CBG21694 [Caenorhabditis briggsae], gi\|187022421\|em...	219.0	[0..1]	[142..1]
HIG1A_RAT - HIG1 domain family member 1A, mitochondrial OS=Rattus norvegicus GN=Higd1a PE=1 SV=2	124.0	[0..34]	[108..6]
gi\|148677178, gi... - gi\|19879246\|gb\|AAK21983.1\| unknown [Mus musculus], gi\|148677180\|gb\|EDL09127.1\| HIG1 domain family, m...	124.0	[0..34]	[108..6]
gi\|114603533 - gi\|114603533\|ref\|XP_527130.2\| PREDICTED: hypothetical protein [Pan troglodytes]	124.0	[0..29]	[113..15]
HIGD2A - HIG1 hypoxia inducible domain family, member 2A gi\|123981980, gi... - gi\|123996809\|gb\|ABM86006.1\| HIG1 domain family, member 2A [synthetic construct], gi\|123981980\|gb\|ABM...	123.0	[0..29]	[113..15]
gi\|220948008, gi... - gi\|220957272\|gb\|ACL91179.1\| CG9921-PA [synthetic construct], gi\|220948008\|gb\|ACL86547.1\| CG9921-PA [... FBpp0305494, FBp... - type=protein; loc=X:complement(16225595..16225758,16225842..16225986); ID=FBpp0305495; name=CG9921-P...	123.0	[0..33]	[109..21]
gi\|125982268, gi... - gi\|54643373\|gb\|EAL32117.1\| GA22125-PA [Drosophila pseudoobscura], gi\|125982268\|ref\|XP_001355061.1\| G...	122.0	[0..33]	[112..21]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAEPHDFRD HKAHIKWTQE REAYRASIPL IPQDMSGGSR GQTASTTALQ KALNNPLVPL  60
   61 GMLATTGCLI GMMVATLRRS SRGAQYFMRG RVVAQGFTVA ALVGGAVMFG IGAPTEAALR 120
  121 APGKGQANIV SLTPPPAVPQ NNSA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.522879
Match:	PF04588.4
Description:	No description for PF04588.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits