YRC Public Data Repository - Protein Structure Prediction

Protein:	clec-183
Organism:	Caenorhabditis elegans
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clec-183.

Description	E-value	Query Range	Subject Range
PGCA_BOVIN - Aggrecan core protein OS=Bos taurus GN=ACAN PE=1 SV=3	155.0	[0..21]	[214..2119]
gi\|45384426, gi\|... - ref\|NP_990286.1\| chondroitin sulfate proteoglycan core protein [Gallus gallus], gi\|1699007\|gb\|AAC60...	151.0	[0..21]	[214..1861]
gi\|532344, gi\|11... - gi\|532344\|gb\|AAA21000.1\| aggrecan, gi\|11990616\|ref\|NP_071526.1\| aggrecan [Rattus norvegicus]	150.0	[0..21]	[214..1916]
gi\|57047785 - gi\|57047785\|ref\|XP_536187.1\| PREDICTED: similar to Aggrecan core protein precursor (Cartilage-specif...	150.0	[0..21]	[214..2086]
gi\|27356854 - gi\|27356854\|gb\|AAL89535.1\| putative CD209L1 protein [Pan troglodytes]	150.0	[0..19]	[210..277]
CLC4M_SYMSY - C-type lectin domain family 4 member M OS=Symphalangus syndactylus GN=CLEC4M PE=3 SV=1	149.0	[0..31]	[210..266]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLPVTLLL GAVIFVSTKS TCRTRTKPPS TVPMNEVTEA VTTKKASNVT VKPTTCEASW  60
   61 TRVERSIGGW CLKVYNGFVH QDQASQACIR IGAELSGSES SAERAVIARL GKERMLAASD 120
  121 YKFGTIRVGI ARPTTTRAWA LTDGNNDGGQ QGIQWSKGEP QLGPTSGYSH NCALMWIWAS 180
  181 TGTSPYEHGK YFHKFVHLLG RTCTEDLFVE SVLLDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	1sl6A
Description:	Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits