YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE03637
Organism: Caenorhabditis elegans
Length: 796 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03637.

Description E-value Query
Range
Subject
Range
gi|157749677 - gi|157749677|ref|XP_001678552.1| Hypothetical protein CBG13338 [Caenorhabditis briggsae AF16]
gi|187028744, gi... - gi|39587745|emb|CAE67763.1| Hypothetical protein CBG13338 [Caenorhabditis briggsae], gi|187028744|em...
629.0 [0..1] [796..1]

Back

Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFTRRAVSP RASFVFDRHV GTINSSLSRR PRISECVEEE EEDGGGFDLF EEMRQPIQEN  60
   61 IPMIILEEEE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDNDNLVMSV ARPVRVHFAV DVENLHAHQS VYVVGSNDVL GTWEATRAMP LVQDPDRFMR  60
   61 WKGSIVTDVH QLKFRYFIGY NLMSDQGERL IVDKWEAFLH PRSTLCLAES RNDECRVDRV 120
  121 DLFGYYAGRK CVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.522879
Match: 1cygA
Description: CYCLODEXTRIN GLUCANOTRANSFERASE (E.C.2.4.1.19) (CGTASE)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [204-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGWLQYPDEN QILLRLHGNA LKFYKTAKER KNCRVKMTPL DVRFKAPPSG HISFSYGEDE  60
   61 EDEEEDQNVP SNKCTHSATH VAVLSDPRPK FYDQEDTGVT FNNNKDYLVF RTHCLAAEFL 120
  121 AFYIEIFSEE RKRIGACYAL PSSLQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [350-717]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGIIHLPFI NSSGRPIGQV SIEYLCVRAL TRLDGPQFMD QTYCRHWKKR NALEVGHRGA  60
   61 GNSYTKFAMA RENTIHSLNT AAKNGADYVE FDVQLTKDRI AVIYHDFHVL VSVARRDGLA 120
  121 MPPPMTREQL DSSNLDYHEL PVKDLKLSQL KLLMLDHLSF PQKKENVKKL VEAGEEEEDF 180
  181 KPFPTLLEAL TKVDPDVGFN VEVKYPMMQN NGEHECDHYF ERNLFVDVIL ADVMKHAGNR 240
  241 RIMFSSFDPD ICSMVATKQN KYPVLFLCVG ETQRYTPFQD QRTSTSMTAV NFAAGADLLG 300
  301 VNFNSEDLLK DPMPVKKANE FGMVTFVWGE DLDKKENINY FKKELGVDGV IYDRIGEEER 360
  361 RRNVFIVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.39794
Match: 1ydyA
Description: Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.322782393124324 bayes_pls_golite062009
hydrolase activity 0.114597543302679 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.10444517300189 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.0391669406455814 bayes_pls_golite062009
phosphoric diester hydrolase activity 0.0229452028027644 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [718-796]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REQKRALLSC SGASTPQRAA SPSPVSSENN NTSPPHSAKL TRNAQSDSAL LEENEDDVEH  60
   61 LSDKLNITGF QSAPMVSTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle