YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-4
Organism:	Caenorhabditis elegans
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-4.

Description	E-value	Query Range	Subject Range
gi\|47212525 - gi\|47212525\|emb\|CAG06230.1\| unnamed protein product [Tetraodon nigroviridis]	193.0	[0..1]	[204..7]
gi\|50751470 - gi\|50751470\|ref\|XP_422414.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...	190.0	[0..25]	[213..171]
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	179.0	[0..63]	[208..288]
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	176.0	[0..26]	[208..35]
gi\|73977219 - gi\|73977219\|ref\|XP_862710.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 21kDa, V0 subu...	175.0	[0..1]	[213..1]
gi\|51704045, gi\|... - gi\|51704045\|gb\|AAH81160.1\| MGC84266 protein [Xenopus laevis], gi\|148228587\|ref\|NP_001087741.1\| MGC84...	173.0	[0..1]	[213..1]
gi\|62858855, gi\|... - gi\|89266781\|emb\|CAJ82500.1\| ATPase, H+ transporting, lysosomal 21kDa, V0 subunit c [Xenopus (Siluran...	172.0	[0..1]	[213..1]
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	170.0	[0..45]	[208..43]
gi\|134091324, gi... - gi\|50255735\|gb\|EAL18467.1\| hypothetical protein CNBJ1090 [Cryptococcus neoformans var. neoformans B-...	169.0	[0..17]	[208..11]
gi\|37589073, gi\|... - gi\|41054655\|ref\|NP_955855.1\| ATPase, H+ transporting, V0 subunit B [Danio rerio], gi\|37589073\|gb\|AAH...	169.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGAILKTT ATLTVITTLI ILGTGLFYML SGQGHRFDIG WFLTSTSPHM WAGLGIGFSL  60
   61 SLSVLGAGWG IFTTGSSILG GGVKAPRIRT KNLVSIIFCE AVAIFGIIMA FVFVGKLAEF 120
  121 RREDLPDTED GMAILARNLA SGYMIFGGGL TVGLSNLVCG LAVGIVGSGA AIADAANPAL 180
  181 FVKILIIEIF ASAIGLFGMI IGIVQTNKAS FGNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits