YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03582
Organism:	Caenorhabditis elegans
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03582.

Description	E-value	Query Range	Subject Range
gi\|45767818 - gi\|45767818\|gb\|AAH67667.1\| Zgc:66100 protein [Danio rerio]	302.0	[0..3]	[199..114]
gi\|47219410 - gi\|47219410\|emb\|CAG01573.1\| unnamed protein product [Tetraodon nigroviridis]	301.0	[0..3]	[199..113]
gi\|39597428, gi\|... - gi\|39597428\|emb\|CAE59658.1\| Hypothetical protein CBG03076 [Caenorhabditis briggsae], gi\|187036892\|em... gi\|157751046 - gi\|157751046\|ref\|XP_001679235.1\| Hypothetical protein CBG03076 [Caenorhabditis briggsae AF16]	297.0	[0..1]	[199..1]
AMMR1_MOUSE - AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1 gi\|151556656, gi... - gi\|157170502\|gb\|AAI53031.1\| Alport syndrome, mental retardation, midface hypoplasia and elliptocytos...	296.0	[0..3]	[199..136]
gi\|74008099 - gi\|74008099\|ref\|XP_549183.2\| PREDICTED: similar to AMME syndrome candidate gene 1 protein isoform 1 ...	296.0	[0..3]	[199..124]
AMER1_PONPY - AMME syndrome candidate gene 1 protein homolog - Pongo pygmaeus (Orangutan) AMMR1_PONAB - AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1	296.0	[0..3]	[199..125]
AMMECR1 - Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 gi\|109131916 - gi\|109131916\|ref\|XP_001099875.1\| PREDICTED: AMMECR1 protein [Macaca mulatta]	296.0	[0..3]	[199..125]
gi\|76659110 - gi\|76659110\|ref\|XP_872852.1\| PREDICTED: similar to AMME syndrome candidate gene 1 protein [Bos tauru...	295.0	[0..3]	[199..96]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSANIQMAV YCFDVINAQL NREKEPPVPK EIPNVKLPLF VTWKKGHQHD LRGCIGTFSD  60
   61 LRLGEGLNEY AKTSAFHDSR FKPISREEVP SLQCGVSLLI NFEPIHNFRD WTIGRHGVRM 120
  121 NFDDGHRNRS AVFLPEVAQE QGWNHVETID HLIRKSGYGG HINDALRSAL RIVRFQSSKL 180
  181 VLDYKDYVNY KQSHGLPLPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.09691
Match:	1vajA
Description:	Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits