YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03574
Organism:	Caenorhabditis elegans
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03574.

Description	E-value	Query Range	Subject Range
gi\|39589215, gi\|... - gi\|39589215\|emb\|CAE57948.1\| Hypothetical protein CBG01005 [Caenorhabditis briggsae], gi\|187038609\|em... gi\|157748861 - gi\|157748861\|ref\|XP_001678144.1\| Hypothetical protein CBG01005 [Caenorhabditis briggsae AF16]	263.0	[0..1]	[153..1]
gi\|31196941, gi\|... - gi\|31196941\|ref\|XP_307418.1\| Anopheles gambiae str. PEST AGAP012515-PA [Anopheles gambiae str. PEST]... AGAP012515-PA - F-type H+-transporting ATPase subunit f\|protein_coding\|UNKN:10361647:10361970:-1\|gene:AGAP012515	146.0	[0..46]	[142..3]
gi\|108383142 - gi\|108383142\|gb\|ABF85708.1\| IP01747p [Drosophila melanogaster]	139.0	[0..47]	[142..5]
gi\|94468562 - gi\|94468562\|gb\|ABF18130.1\| mitochondrial ATP synthase F chain [Aedes aegypti]	132.0	[0..47]	[142..4]
gi\|125811343, gi... - gi\|54637021\|gb\|EAL26424.1\| GA18359 [Drosophila pseudoobscura pseudoobscura], gi\|125811343\|ref\|XP_001... gi\|125811343\|ref... - GA18359-PA [Drosophila pseudoobscura], GA18359 [Drosophila pseudoobscura pseudoobscura]	130.0	[0..47]	[142..4]
gi\|91088867 - gi\|91088867\|ref\|XP_972139.1\| PREDICTED: similar to CG4692 CG4692-PB [Tribolium castaneum]	127.0	[0..47]	[142..4]
gi\|239788735, gi... - gi\|89473758\|gb\|ABD72691.1\| mitochondrial ATP synthase F chain-like [Acyrthosiphon pisum], gi\|2397887...	123.0	[0..46]	[142..3]
ENST00000449683,... - IPI:IPI00219291.5\|SWISS-PROT:P56134-2\|ENSEMBL:ENSP00000377740;ENSP00000407540\|REFSEQ:NP_001003713\|H-... gi\|114614841 - gi\|114614841\|ref\|XP_001138884.1\| PREDICTED: similar to F1Fo-ATPase synthase f subunit isoform 4 [Pan...	121.0	[0..71]	[142..19]
gi\|109496584 - gi\|109496584\|ref\|XP_001071017.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial ...	121.0	[0..71]	[142..130]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWFRPPPPH TQLRPWVPDA IFIPISRAVE RVGVFFYNRV LNKTEVGLFD KRWNKNVHGP  60
   61 YCHWRYYGKL DTKFMDVKLG DLPAWMARRE KTPSAFYNEF MRNIWRVHNL YYSGPVYNNT 120
  121 VKVIFRFIFA YSFLNWLVKS HRYVDFQKTM YHW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits