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View Structure Prediction Details

Protein: CE03544
Organism: Caenorhabditis elegans
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03544.

Description E-value Query
Range
Subject
Range
gi|109895306, gi... - gi|110431374|ref|NP_001036035.1| chitinase 7 [Tribolium castaneum], gi|109895306|gb|ABG47445.1| chit...
341.0 [0..56] [423..67]

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Predicted Domain #1
Region A:
Residues: [1-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNYSLLDK FHSYYERRAH NNNELTTKLV KRVVIISGIF LFCGIVSYAL TTFVFHFYKE  60
   61 DKFSKNEVGL DPICKRRIVG YYSEYDSTDI SKNQLAKLTH AVFAFVDIKY DGTLQFKNLI 120
  121 TEQKFFSLKS KARSLHSNLK LMFSIGGDEN SFDFSSALAN TQMKSTLITS IIAFIHSHMI 180
  181 DGVDLHWKWP TSRDKSNYAT LIREIREKVD ELDAKIIISI TIPPVGVSDW ESGFDLDAIQ 240
  241 KHVDFINVHS MDYAKPLPNQ WGTPTGPSAS MNFNIGLRQH YNVDWTMKHY TCELKKPSMI 300
  301 NLVIPFYVRM WKNVQKAIDN RTEVFRNVEL KDNEVEGRSQ LSRYTVEHED MELSPESWDN 360
  361 ATQTPYVLDL KTRTFFTYEN EKSIKVKLDY VNKMDLGGVW IWSVDMDDRL NTLLSFVFPN 420
  421 ELCSSYSENG IKYSC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.69897
Match: 1wawA
Description: Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
growth factor activity 0.34357571678721 bayes_pls_golite062009
receptor binding 0.21634641574378 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle