YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03462
Organism:	Caenorhabditis elegans
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03462.

Description	E-value	Query Range	Subject Range
gi\|187034366, gi... - gi\|39593878\|emb\|CAE62171.1\| Hypothetical protein CBG06218 [Caenorhabditis briggsae], gi\|187034366\|em... gi\|157755639 - gi\|157755639\|ref\|XP_001670163.1\| Hypothetical protein CBG06218 [Caenorhabditis briggsae AF16]	246.0	[0..7]	[213..8]
gi\|109497489 - gi\|109497489\|ref\|XP_001080376.1\| PREDICTED: similar to Glycolipid transfer protein (GLTP) [Rattus no...	219.0	[0..5]	[185..125]
gi\|46110184, gi\|... - gi\|46110184\|ref\|XP_382150.1\| hypothetical protein FG01974.1 [Gibberella zeae PH-1], gi\|42544895\|gb\|E...	214.0	[0..8]	[201..7]
gi\|2133321, gi\|5... - gi\|523338\|gb\|AAA20542.1\| HET-C2, pir\|\|S59950 het-c2 protein - Podospora anserina	204.0	[0..6]	[205..8]
gi\|6959684 - gi\|6959684\|gb\|AAF33209.1\|AF209703_1 glycolipid transfer protein [Mus musculus]	204.0	[0..10]	[185..1]
gi\|109099519 - gi\|109099519\|ref\|XP_001089145.1\| PREDICTED: glycolipid transfer protein isoform 2 [Macaca mulatta] GLTP_PANTR - Glycolipid transfer protein OS=Pan troglodytes GN=GLTP PE=2 SV=1 GLTP - glycolipid transfer protein CCDS9136.1_1 - null ENSCJAT00000018919 - null	203.0	[0..10]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLGSEPET YQIMKTIEKS IIENDNVDLE QYLLFWEHVC NVMCSWGTIF SFVVKDVTAK  60
   61 LEKLTQMRSS DPDSYRTIIG MATKESENGT IRNQKPNRSG TGHLMVLNRA LEFVIDLLDG 120
  121 VFTSNDENVS TIARSSYDKH LSQLHSWPIR TAVAAALYTL PRKPEFLCRL RGDMPEDDDN 180
  181 QFHDIFNRDG RDIVRRVNKL VENFELTDYN PSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1swxA
Description:	Crystal structure of a human glycolipid transfer protein in apo-form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits