YRC Public Data Repository - Protein Structure Prediction

Protein:	gpc-1
Organism:	Caenorhabditis elegans
Length:	62 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpc-1.

Description	E-value	Query Range	Subject Range
gi\|62858615, gi\|... - gi\|89273841\|emb\|CAJ81829.1\| guanine nucleotide binding protein (G protein), gamma 7 [Xenopus tropica...	106.0	[0..1]	[62..7]
GBG12_BOVIN - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 OS=Bos taurus GN=GNG12 PE=1 SV=2	106.0	[0..1]	[62..11]
tr\|G3V2N0\|G3V2N0... - Guanine nucleotide-binding protein subunit gamma OS=Homo sapiens GN=GNG2 PE=3 SV=1, Tax_Id=9606 Gene... gi\|114653023 - gi\|114653023\|ref\|XP_001158267.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	106.0	[0..1]	[62..48]
GBG7_MOUSE - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Mus musculus GN=Gng7 PE=1 SV=2 gi\|117616394 - gi\|117616394\|gb\|ABK42215.1\| G protein gamma 7 [synthetic construct]	106.0	[0..1]	[62..7]
gi\|50539862, gi\|... - gi\|50539862\|ref\|NP_001002397.1\| guanine nucleotide binding protein (G protein), gamma 7 [Danio rerio...	105.0	[0..1]	[62..7]
GNG7 - guanine nucleotide binding protein (G protein), gamma 7 gi\|109122851 - gi\|109122851\|ref\|XP_001098800.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein... gi\|114674554 - gi\|114674554\|ref\|XP_001152049.1\| PREDICTED: guanine nucleotide binding protein (G protein), gamma 7 ... gi\|208968219 - gi\|208968219\|dbj\|BAG73948.1\| FLJ00058 [synthetic construct]	105.0	[0..1]	[62..7]
gi\|47229899 - gi\|47229899\|emb\|CAG10313.1\| unnamed protein product [Tetraodon nigroviridis]	105.0	[0..1]	[62..7]
gi\|120577547, gi... - gi\|50416410\|gb\|AAH77778.1\| MGC80106 protein [Xenopus laevis], gi\|120577547\|gb\|AAI30055.1\| MGC80106 p...	105.0	[0..1]	[62..7]
GBG7_RAT - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Rattus norvegicus GN=Gng7 PE=2 ...	105.0	[0..1]	[62..7]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENIKASTEQ LCAEANIQRK KVSEVSKELL DFCEKNKTND MLVSGPTDQH NPFQEKKSCS  60
   61 VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1gg2G
Description:	Transducin (heterotrimeric G protein), gamma chain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.069372177277377	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: